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Author:

Sun Fu (Sun Fu.) | Wang Lei (Wang Lei.) | Dai Lanlan (Dai Lanlan.) | Yuan Qi-ling (Yuan Qi-ling.) | Liu Liang (Liu Liang.) | Zhou Hanlin (Zhou Hanlin.) | Zhang Jianguo (Zhang Jianguo.) | Zhang Yin-gang (Zhang Yin-gang.)

Indexed by:

SCIE PubMed Scopus

Abstract:

Objective: To identify the likely causal mutation that results in disc degeneration in a pedigree with a high incidence of disc degeneration. Materials and Methods: A large pedigree with a high incidence of disc degeneration was recruited for this study. Exome sequencing was completed on four family members with disc degeneration to screen for potential causal gene variants. Detected variants were filtered against the 1000 Genomes Project, the Short Genetic Variations database (dbSNP), and the Beijing Genomics Institute (BGI) in-house database. After removing synonymous variants, Sanger sequencing was used to verify the lack of the candidate single nucleotide polymorphism (SNP) in five healthy subjects of the study family. Results: We identified a novel SNP variant, Chr12:g.53494591T>C. c.T430C (p.S144P) in the insulin-like growth factor binding protein-6 (IGFBP6) gene. This variant was shared by all four affected family members, but not by five unaffected members in the same pedigree. Furthermore, this variant was not detected in 200 unrelated healthy people. Conclusions: The c.T430C (p.S144P) variant of IGFBP6 was identified as the likely causal variant associated with increased risk of familial disc degeneration in the studied pedigree.

Keyword:

disc degeneration exome sequencing potent gene single nucleotide polymorphism variant

Author Community:

  • [ 1 ] [Sun Fu; Yuan Qi-ling; Liu Liang; Zhang Yin-gang] Xi An Jiao Tong Univ, Affiliated Hosp 1, Dept Orthoped, Yan Ta West Rd 277, Xian 710061, Shaanxi, Peoples R China
  • [ 2 ] [Sun Fu; Wang Lei] Xian Med Univ, Affiliated Hosp 1, Dept Orthoped, Xian, Shaanxi, Peoples R China
  • [ 3 ] [Dai Lanlan; Zhou Hanlin; Zhang Jianguo] BGI Shenzhen, Jinsha Rd 132, Shenzhen 518108, Peoples R China

Reprint Author's Address:

  • Xi An Jiao Tong Univ, Affiliated Hosp 1, Dept Orthoped, Yan Ta West Rd 277, Xian 710061, Shaanxi, Peoples R China.; Zhang, JG (reprint author), BGI Shenzhen, Jinsha Rd 132, Shenzhen 518108, Peoples R China.

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Source :

GENETIC TESTING AND MOLECULAR BIOMARKERS

ISSN: 1945-0265

Year: 2017

Issue: 10

Volume: 21

Page: 580-585

1 . 1 8 1

JCR@2017

1 . 7 9 5

JCR@2020

ESI Discipline: MOLECULAR BIOLOGY & GENETICS;

ESI HC Threshold:227

JCR Journal Grade:4

CAS Journal Grade:4

Cited Count:

WoS CC Cited Count: 3

SCOPUS Cited Count: 4

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 7

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